[HTML][HTML] Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor

W Deng, J Lee, H Wang, J Miller, A Reik, PD Gregory… - Cell, 2012 - cell.com
W Deng, J Lee, H Wang, J Miller, A Reik, PD Gregory, A Dean, GA Blobel
Cell, 2012cell.com
Chromatin loops juxtapose distal enhancers with active promoters, but their molecular
architecture and relationship with transcription remain unclear. In erythroid cells, the locus
control region (LCR) and β-globin promoter form a chromatin loop that requires transcription
factor GATA1 and the associated molecule Ldb1. We employed artificial zinc fingers (ZF) to
tether Ldb1 to the β-globin promoter in GATA1 null erythroblasts, in which the β-globin locus
is relaxed and inactive. Remarkably, targeting Ldb1 or only its self-association domain to the …
Summary
Chromatin loops juxtapose distal enhancers with active promoters, but their molecular architecture and relationship with transcription remain unclear. In erythroid cells, the locus control region (LCR) and β-globin promoter form a chromatin loop that requires transcription factor GATA1 and the associated molecule Ldb1. We employed artificial zinc fingers (ZF) to tether Ldb1 to the β-globin promoter in GATA1 null erythroblasts, in which the β-globin locus is relaxed and inactive. Remarkably, targeting Ldb1 or only its self-association domain to the β-globin promoter substantially activated β-globin transcription in the absence of GATA1. Promoter-tethered Ldb1 interacted with endogenous Ldb1 complexes at the LCR to form a chromatin loop, causing recruitment and phosphorylation of RNA polymerase II. ZF-Ldb1 proteins were inactive at alleles lacking the LCR, demonstrating that their activities depend on long-range interactions. Our findings establish Ldb1 as a critical effector of GATA1-mediated loop formation and indicate that chromatin looping causally underlies gene regulation.
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